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OptFlux

OptFlux

OptFlux is an open-source and modular software aimed at being the reference computational applicatio

Summary
License GNU General Public License version 3.0 (GPLv3)
Updated on Oct 21, 2015
Version na
Site URL http://www.optflux.org/
Download URL http://sourceforge.net/projects/optflux/files/l...
Author Guest
Category Science
Views 805
Downloads 0
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Description

beta OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.

Features       

  • SBML compatible (import/export)
  • CellDesigner layouts compatible (import/export) - add simulation values
  • Metatool compatible (import/export)
  • Flat Files compatible (import/export)
  • Phenotype simulation - FBA / MOMA / ROOM / MFA
  • Flux Variability Analysis (FVA)
  • Elementary Modes Analysis (EMA / EFMs)
  • Bi-level Optimization (OptGene / OptKnock)
  • Multiobjective Optimization
  • Simulation/Optimization with Gene-Protein-Reaction (GPR) information
  • Regulatory Network Simulation / Optimization
  • Visualization of CellDesigner Layouts (Biovisualizer)

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